PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097456001
Common NameGSBRNA2T00097456001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 406aa    MW: 44702.7 Da    PI: 4.5297
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097456001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.53.7e-37119218298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                          lfqrlw++eDei lL+G++d+ ++++g  s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++
  GSBRNA2T00097456001 119 LFQRLWTDEDEIELLRGFLDYvATHRGGnSSHPpDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQST 208
                          79*******************7666776355558******************************************************** PP

               DUF573  89 felskkiWgs 98 
                          fe+s+kiW++
  GSBRNA2T00097456001 209 FEISRKIWNQ 218
                          ********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-33120217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MTSDQRDVVF SLESPDLEEG AAGDGGESDT DENDDVAIPE TNEEPEDDDP EEEDLTAVTV  60
TVSASSTDAV TVALPAGSAV PVSVIPVDSS DPKWHRVTEI VHHQRPLPPP TPIDDSRRLF  120
QRLWTDEDEI ELLRGFLDYV ATHRGGNSSH PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR  180
LKKKYRNVMS KISSGKEVFF KSPHDQSTFE ISRKIWNQTG KIIGFEDNNA MDFEETNTNG  240
NYFNSPGGLN PSNVEIDSEN GVERRLMMSS SSGGSRKRSR SRIGKIEEDN KPIITPSEGQ  300
TPNAASNVNL NEPATAVVGG NIGVLIEETV KNCVSPVIKE MMNGTTSMMM AAMGGGGNGG  360
NKAVSDERWR KQQILELEVY SRRLELVQEQ IRATLHELKT MPSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124212.10.0PREDICTED: uncharacterized protein LOC103849159
RefseqXP_013750762.10.0PREDICTED: uncharacterized protein LOC106453076
TrEMBLA0A078ILF10.0A0A078ILF1_BRANA; BnaAnng10740D protein
STRINGBra040416.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-133DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]